DreEX0040890 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20238748-20251946:-
Coord C1 exon
chr20:20251823-20251946
Coord A exon
chr20:20243890-20243996
Coord C2 exon
chr20:20238748-20238876
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTCCCCTTTGCAGTTT
3' ss Score
11.16
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGAACAGTTTTTTGCTGGGGAATGCGCAGATCGTGGAGTGGCCTATAGTTTACAGTAATGACGGATTCTGCAAGCTCTCTGGTTACCACAGGGCAGAGGTCATGCAGAAGAGCAGCACATGCAG
Seq A exon
TTTCATGTACGGCGAGCTGACAGACAAGAAGACAATAGACAAAGTCAGACAGACCTTTGATAACTATGAGTCCAATTGCTTTGAAGTGCTGCTCTATAAGAAGAACA
Seq C2 exon
GAACACCTGTATGGCTCCATATGCAGGTGGCCCCCATCAGGAACGAGAATGATAAGGTGGTCCTGTTCCTCTGCACTTTCAAGGATATCACTGTCTTCAAGCAGCCCATAGAAGATGAGACCACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(37.0=95.2)
A:
PF134261=PAS_9=FE(33.3=100)
C2:
PF134261=PAS_9=PD(28.7=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGCTGGGGAATGCGCAG
R:
TGGTGGTCTCATCTTCTATGGGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]