RnoEX0046043 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98113248-98135592:-
Coord C1 exon
chr6:98135469-98135592
Coord A exon
chr6:98119706-98119812
Coord C2 exon
chr6:98113248-98113376
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTATTTCTTCCAGTTT
3' ss Score
8.97
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AATCAAGTTTCTTACTGGGAAATGCCCAAATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGATTTTGTAAACTCTCTGGATATCATCGAGCTGACGTCATGCAGAAAAGCAGCACTTGCAG
Seq A exon
TTTTATGTATGGAGAACTGACCGATAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTATAAAAAAAACC
Seq C2 exon
GTACCCCCGTTTGGTTTTACATGCAAATTGCACCAATAAGAAACGAACACGAGAAGGTGGTCTTGTTCCTGTGTACGTTCAAGGATATCACGCTGTTCAAACAGCCCATAGAGGATGACTCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(37.3=100)
A:
PF134261=PAS_9=FE(32.7=100)
C2:
PF134261=PAS_9=PD(28.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTCTTACTGGGAAATGCC
R:
TGAGTCATCCTCTATGGGCTGT
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]