HsaEX6071631 @ hg19
Exon Skipping
Gene
ENSG00000140015 | KCNH5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:HGNC Symbol;Acc:6254]
Coordinates
chr14:63468049-63483672:-
Coord C1 exon
chr14:63483549-63483672
Coord A exon
chr14:63473084-63473190
Coord C2 exon
chr14:63468049-63468177
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTCCCCCCCAGTTT
3' ss Score
10.65
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
AATCAAGTTTCTTACTGGGAAATGCCCAGATTGTGGATTGGCCTGTAGTTTATAGTAATGACGGTTTTTGTAAACTCTCTGGATATCATCGAGCTGACGTCATGCAGAAAAGCAGCACTTGCAG
Seq A exon
TTTTATGTATGGGGAATTGACTGACAAGAAGACCATTGAGAAAGTCAGGCAAACTTTTGACAACTACGAATCAAACTGCTTTGAAGTTCTTCTGTACAAGAAAAACA
Seq C2 exon
GAACCCCTGTTTGGTTTTATATGCAAATTGCACCAATAAGAAATGAACATGAAAAGGTGGTCTTGTTCCTGTGTACTTTCAAGGATATTACGTTGTTCAAACAGCCAATAGAGGATGATTCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140015-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(37.3=100)
A:
PF134261=PAS_9=FE(32.7=100)
C2:
PF134261=PAS_9=PD(28.2=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTCTTACTGGGAAATGCC
R:
TGTTGAATCATCCTCTATTGGCTGT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)