BtaEX6054412 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75587505-75605473:-
Coord C1 exon
chr10:75605350-75605473
Coord A exon
chr10:75592422-75592528
Coord C2 exon
chr10:75587505-75587633
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCTTCCAGTTT
3' ss Score
11.21
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
AATCGAGTTTCTTACTGGGAAATGCCCAGATTGTGGATTGGCCTGTAGTTTATAGTAATGACGGTTTTTGCAAACTCTCTGGGTATCATCGAGCTGACGTCATGCAGAAGAGTAGCACTTGCAG
Seq A exon
TTTTATGTATGGAGAATTGACTGACAAAAAAACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGCTTTGAAGTTCTCTTGTACAAGAAAAACA
Seq C2 exon
GAACCCCTGTTTGGTTTTATATGCAAATTGCACCGATAAGAAATGAACATGAAAAGGTGGTTTTGTTCCTATGCACTTTCAAGGATATTACGTTGTTCAAACAGCCAATAGAGGATGATTCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'1-3,'1-1,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(37.3=100)
A:
PF134261=PAS_9=FE(32.7=100)
C2:
PF134261=PAS_9=PD(28.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTTCTTACTGGGAAATGCC
R:
TGTTGAATCATCCTCTATTGGCTGT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]