GgaEX6039304 @ galGal4
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXK7]
Coordinates
chr5:53445049-53464829:+
Coord C1 exon
chr5:53445049-53445164
Coord A exon
chr5:53449233-53449625
Coord C2 exon
chr5:53464400-53464829
Length
393 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTCTCTTACAGGTT
3' ss Score
13.74
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTTGGACCAAGTTCGCACGGTTGACACGGGCCTTGACGAACAGTCGGAGTGTGCTGCAGCAGCTGACGCCGATGAACAAAGCCGAGGTGGTGCACAAGCATTCCCGCCTGGCTGAA
Seq A exon
GTTCTCCAGCTGGGATCTGATATTCTTCCTCAGTACAAGCAAGAAGCTCCAAAGACTCCACCGCACATTATATTACATTATTGTGCTTTTAAGACCACTTGGGACTGGGTCATCCTAATTCTAACCTTCTACACAGCAATTATGGTTCCATATAATGTCTCCTTCAAGACGAAGCAGAACAACATTGCCTGGCTTGTGCTGGACAGTGTCGTGGACGTTATTTTTCTGGTTGACATTGTTTTGAACTTTCATACAACCTTTGTTGGCCCTGGTGGAGAGGTTATATCTGATCCCAAGCTCATAAGGATGAACTACCTGAAGACGTGGTTTGTGATTGATCTTCTGTCCTGTTTACCGTATGACATCATCAATGCCTTTGAGAATGTGGATGAG
Seq C2 exon
GGGATCAGTAGCCTCTTCAGTTCTCTAAAAGTGGTGCGTCTTCTCCGACTTGGTCGAGTTGCCAGAAAGTTGGACCATTATTTGGAATATGGTGCTGCCGTACTGGTACTGCTGGTGTGTGTGTTTGGACTGGTGGCTCACTGGCTAGCCTGCATATGGTACAGCATCGGGGACTATGAAGTTATAGACGAAGTCACTAACACAATCAAAACAGATAGCTGGCTCTACCAGTTGGCACTGAGTATTGGGACACCATATCGATACAACACCACTGGCTCAGGGCAGTGGGAAGGAGGACCCAGTAAAGACTCCTTGTACATATCCTCTCTCTACTTTACCATGACAAGCCTTACAACGATAGGATTTGGAAACATAGCACCAACCACTGATGGGGAGAAGATTTTTTCAGTGGCCATGATGATGGTTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
C2:
PF0052026=Ion_trans=FE(65.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACAAAGCCGAGGTGGT
R:
TCTTTACTGGGTCCTCCTTCCC
Band lengths:
354-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]