BtaEX6054752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81036600-81040040:-
Coord C1 exon
chr10:81039948-81040040
Coord A exon
chr10:81038469-81038699
Coord C2 exon
chr10:81036600-81036747
Length
231 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTTCTCCCTCCACAGCTG
3' ss Score
12.57
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCCGAGACAGCAGCCAATCGCATCTGCAAGGTGCTGGCCGTCAACCAGGAGAACGAGCAGCTCATGGAGGACTACGAGAAGCTGGCCAGCGAC
Seq A exon
CTGCTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAACCGGGCACCCGAGAACACCATGCACGCCATGCAGCAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTTCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGCCTCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq C2 exon
GACATCAACAACGCATGGGGCTGCCTGGAGCAGGCGGAGAAGGGCTATGAGGAGTGGCTGCTGAATGAGATCCGGAGGCTGGAGCGGCTCGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'25-14,'25-12,27-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
PF0043516=Spectrin=FE(68.5=100)
C2:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGCAGCCAATCGCATC
R:
GTCCGTCCAGGCCTCGTG
Band lengths:
237-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]