RnoEX6029194 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103389817-103393554:-
Coord C1 exon
chr6:103393462-103393554
Coord A exon
chr6:103391950-103392180
Coord C2 exon
chr6:103389817-103389964
Length
231 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCTCGACACCTCAGCTG
3' ss Score
4.24
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCGGAAACAGCAGCCAATCGAATCTGTAAAGTGTTGGCCGTCAATCAAGAGAATGAACAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
Seq A exon
CTGTTAGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCCGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTACCGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGCTGCGGCTAAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq C2 exon
GATATCAACAATGCCTGGGGCTGCCTGGAACAGGCAGAGAAGGGCTACGAGGAGTGGTTGCTGAATGAGATCCGGAGGCTAGAGAGGTTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCATGAAGCCTGGACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'23-15,'23-13,26-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
PF0043516=Spectrin=FE(68.5=100)
C2:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAACAGCAGCCAATCGAA
R:
TGTCCAGGCTTCATGGATGGA
Band lengths:
236-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]