DreEX6062541 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36211384-36213977:-
Coord C1 exon
chr13:36213885-36213977
Coord A exon
chr13:36212409-36212639
Coord C2 exon
chr13:36211384-36211531
Length
231 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTGGCTCTCTTCAGCTC
3' ss Score
9.22
5' ss Seq
TCGGTTAGC
5' ss Score
1.57
Exon sequences
Seq C1 exon
GCCGAAACGGCAGCCAATCGGATCTGCAAAGTGCTGGCTGTCAATCAGGAGAACGAGCAGCTGATGGAGGACTATGAGAAACTAGCCAGTGAT
Seq A exon
CTCCTGGAGTGGATTCGCAGAACCATCCCGTGGTTGGAGAACCGCGTCCCAGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGATTTCCGGGACTACAGACGACTTCACAAACCACCCAAAGTTCAGGAAAAATGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAACTGCGTCTCAGCAACCGGCCAGCGTTCATGCCTTCGGAGGGAAAGATGGTCTCG
Seq C2 exon
GACATCTCCAATTCATGGGGACGTCTGGAGGGGGCAGAGAAGGGTTATGAAGAGTGGCTGCTCAATGAGATCCGCAGACTTGAGAGACTCGATCATCTTGCTGAGAAATTCCGCCAAAAAGCTGCCATTCACGAGGCCTGGACTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'12-13,'12-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
PF0043516=Spectrin=FE(68.5=100)
C2:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGCAGCCAATCGGATC
R:
TCAGTCCAGGCCTCGTGAAT
Band lengths:
236-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]