MmuEX6081847 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80181361-80184899:-
Coord C1 exon
chr12:80184807-80184899
Coord A exon
chr12:80183393-80183623
Coord C2 exon
chr12:80181361-80181508
Length
231 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTTTGCCACTGTAGCTG
3' ss Score
7.58
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
Seq A exon
CTGTTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCTGAGAACACCATGCATGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTATAGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTTAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq C2 exon
GATATCAACAATGCCTGGGGCTGCCTGGAACAGGCCGAGAAGGGCTACGAGGAGTGGCTGCTGAATGAGATCCGGAGGCTAGAGAGGTTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCATGAAGCCTGGACGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'58-20,'58-18,63-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
PF0043516=Spectrin=FE(68.5=100)
C2:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGCAGCCAATCGCATC
R:
ATCCGTCCAGGCTTCATGGAT
Band lengths:
237-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types