GgaEX6038225 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27555644-27557740:+
Coord C1 exon
chr5:27555644-27555736
Coord A exon
chr5:27556835-27557065
Coord C2 exon
chr5:27557593-27557740
Length
231 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCATTGCTTTTTCAGCTG
3' ss Score
9.63
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCGGAGACAGCAGCAAATCGTATTTGCAAGGTTCTGGCAGTCAACCAAGAGAATGAACAGCTCATGGAAGACTATGAAAAACTGGCCAGTGAT
Seq A exon
CTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGGGCACCAGAGAACACCATGCAAGCCATGCAGCAGAAACTGGAGGACTTCCGGGACTACCGCCGCCTGCATAAGCCCCCCAAAGTCCAAGAGAAGTGCCAACTTGAGATCAATTTCAACACCTTGCAGACCAAGCTACGGCTCAGCAACAGGCCGGCCTTCATGCCTTCAGAAGGGAAAATGGTTTCA
Seq C2 exon
GATATAAACAATGCCTGGGGTGGCCTAGAGCAGGCTGAGAAGGGCTATGAGGAGTGGTTGTTGAATGAGATCCGGAGGCTAGAGAGGCTGGATCACCTGGCAGAGAAGTTCCGGCAGAAAGCATCTATTCACGAGTCCTGGACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'40-24,'40-23,42-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(9.9=35.5)
A:
PF0043516=Spectrin=FE(68.5=100)
C2:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACAGCAGCAAATCGTA
R:
CATCTGTCCAGGACTCGTGAA
Band lengths:
240-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]