BtaEX6054753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81033241-81038699:-
Coord C1 exon
chr10:81038469-81038699
Coord A exon
chr10:81036600-81036747
Coord C2 exon
chr10:81033241-81033391
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTCCCATCCCTGCAGGAC
3' ss Score
13.09
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGCTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAACCGGGCACCCGAGAACACCATGCACGCCATGCAGCAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTTCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGCCTCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq A exon
GACATCAACAACGCATGGGGCTGCCTGGAGCAGGCGGAGAAGGGCTATGAGGAGTGGCTGCTGAATGAGATCCGGAGGCTGGAGCGGCTCGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACGGACG
Seq C2 exon
GCAAAGAGGCCATGCTGCGGCAGAAGGATTACGAGACGGCTACCCTCTCGGAGATCAAGGCCCTGCTCAAGAAGCACGAGGCCTTTGAGAGTGACCTGGCTGCCCACCAGGACCGCGTGGAGCAGATTGCCGCCATTGCCCAGGAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'27-16,'27-14,28-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(68.5=100)
A:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
C2:
PF0043516=Spectrin=FE(47.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACTTCCGGGACTACC
R:
GTCACTCTCAAAGGCCTCGTG
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]