DreEX0010927 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36209640-36212639:-
Coord C1 exon
chr13:36212409-36212639
Coord A exon
chr13:36211384-36211531
Coord C2 exon
chr13:36209640-36209790
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGAATAATCTAAATTTATAGGAC
3' ss Score
7.03
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CTCCTGGAGTGGATTCGCAGAACCATCCCGTGGTTGGAGAACCGCGTCCCAGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGATTTCCGGGACTACAGACGACTTCACAAACCACCCAAAGTTCAGGAAAAATGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAACTGCGTCTCAGCAACCGGCCAGCGTTCATGCCTTCGGAGGGAAAGATGGTCTCG
Seq A exon
GACATCTCCAATTCATGGGGACGTCTGGAGGGGGCAGAGAAGGGTTATGAAGAGTGGCTGCTCAATGAGATCCGCAGACTTGAGAGACTCGATCATCTTGCTGAGAAATTCCGCCAAAAAGCTGCCATTCACGAGGCCTGGACTGACG
Seq C2 exon
GTAAAGAGGAGATGTTGCAGCACAAAGACTTTGAGACGGCGTCACTGTCCGAGATCAAGGCTCTGCTGAAGAAACACGAGGCCTTTGAGAGCGACCTCGCAGCTCATCAGGACAGAGTGGAGCAGATCGCTGCCATCGCTCAGGAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(68.5=100)
A:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
C2:
PF0043516=Spectrin=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGAGAACACCATGCAG
R:
CTTGATCTCGGACAGTGACGC
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]