RnoEX0006330 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103387026-103392180:-
Coord C1 exon
chr6:103391950-103392180
Coord A exon
chr6:103389817-103389964
Coord C2 exon
chr6:103387026-103387176
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCCCCATCTCTGCAGGAT
3' ss Score
11.83
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
CTGTTAGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCCGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTACCGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGCTGCGGCTAAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq A exon
GATATCAACAATGCCTGGGGCTGCCTGGAACAGGCAGAGAAGGGCTACGAGGAGTGGTTGCTGAATGAGATCCGGAGGCTAGAGAGGTTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCATGAAGCCTGGACAGACG
Seq C2 exon
GCAAAGAAGCCATGCTGCGGCAGAAGGATTATGAGACGGCCACCTTGTCCGAGATCAAGGCCCTACTCAAGAAGCACGAGGCCTTTGAGAGTGACCTGGCTGCCCACCAGGACCGCGTGGAGCAGATCGCGGCCATTGCCCAGGAGCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'26-18,'26-15,27-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(68.5=100)
A:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
C2:
PF0043516=Spectrin=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCATGGCTGGAGAATCG
R:
TCATAATCCTTCTGCCGCAGC
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]