GgaEX1006128 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27556835-27558454:+
Coord C1 exon
chr5:27556835-27557065
Coord A exon
chr5:27557593-27557740
Coord C2 exon
chr5:27558304-27558454
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCCATGCTCCTGTCTCTAGGAT
3' ss Score
11.32
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
CTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGGGCACCAGAGAACACCATGCAAGCCATGCAGCAGAAACTGGAGGACTTCCGGGACTACCGCCGCCTGCATAAGCCCCCCAAAGTCCAAGAGAAGTGCCAACTTGAGATCAATTTCAACACCTTGCAGACCAAGCTACGGCTCAGCAACAGGCCGGCCTTCATGCCTTCAGAAGGGAAAATGGTTTCA
Seq A exon
GATATAAACAATGCCTGGGGTGGCCTAGAGCAGGCTGAGAAGGGCTATGAGGAGTGGTTGTTGAATGAGATCCGGAGGCTAGAGAGGCTGGATCACCTGGCAGAGAAGTTCCGGCAGAAAGCATCTATTCACGAGTCCTGGACAGATG
Seq C2 exon
GTAAGGAAGCGATGCTGCAGCAGAAGGATTATGAAACTGCTACCCTCTCGGAGATAAAGGCCCTGCTGAAGAAACACGAGGCCTTTGAGAGCGACCTGGCTGCACACCAGGACCGCGTGGAACAGATTGCTGCTATTGCACAAGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(68.5=100)
A:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
C2:
PF0043516=Spectrin=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCATGCAGCAGAAACTG
R:
GTGTTTCTTCAGCAGGGCCTT
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]