MmuEX6081848 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80178302-80183623:-
Coord C1 exon
chr12:80183393-80183623
Coord A exon
chr12:80181361-80181508
Coord C2 exon
chr12:80178302-80178452
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCCCATCTCTGCAGGAT
3' ss Score
12.22
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGTTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCTGAGAACACCATGCATGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTATAGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTTAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
Seq A exon
GATATCAACAATGCCTGGGGCTGCCTGGAACAGGCCGAGAAGGGCTACGAGGAGTGGCTGCTGAATGAGATCCGGAGGCTAGAGAGGTTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCATGAAGCCTGGACGGATG
Seq C2 exon
GCAAAGAAGCCATGCTTCGGCAGAAGGATTATGAGACAGCCACCCTGTCCGAGATCAAGGCCTTGCTCAAGAAGCACGAGGCTTTTGAGAGTGATCTGGCTGCCCACCAGGACCGCGTGGAGCAGATTGCGGCCATTGCCCAGGAGCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'63-22,'63-20,68-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(68.5=100)
A:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
C2:
PF0043516=Spectrin=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAACACCATGCATGCCA
R:
CAAGGCCTTGATCTCGGACAG
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types