BtaEX6054757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81030713-81032191:-
Coord C1 exon
chr10:81032051-81032191
Coord A exon
chr10:81031117-81031299
Coord C2 exon
chr10:81030713-81030847
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCACGCCCGTCTCTCTCCAGGGA
3' ss Score
10.19
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CGCACGGAGAAACTGCTGGAGACCATTGACCAACTGTACTTGGAGTACGCTAAGCGGGCTGCACCCTTCAACAACTGGATGGAGGGGGCCATGGAGGACCTGCAGGACACCTTCATCGTGCACACCATCGAGGAGATCCAG
Seq A exon
GGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCCGATGCCGACAAGGAGCGCCTGGCTATCCTGGGCATCCACAACGAGGTGTCCAAGATTGTCCAGACCTACCACGTCAACATGGCAGGCACCAACCCCTACACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCAT
Seq C2 exon
GTGCGGCAGCTGGTGCCACGGAGGGACCAGGCCCTGACGGAGGAGCACGCCCGCCAGCAGCACAACGAAAGGCTACGCAAGCAGTTTGGGGCTCAGGCCAATGTCATCGGGCCCTGGATCCAGACCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'31-20,'31-19,32-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.467
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGAGAAACTGCTGGAGAC
R:
CCCGATGACATTGGCCTGAG
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]