GgaEX6038223 @ galGal3
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30578082-30581540:+
Coord C1 exon
chr5:30578082-30578222
Coord A exon
chr5:30580325-30580507
Coord C2 exon
chr5:30581406-30581540
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTCTTCCTTCCACAGGGA
3' ss Score
12.57
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AGGACAGAGAAGCTACTGGAAACAATTGACCAGTTGTACCTGGAATATGCCAAACGAGCTGCCCCCTTCAATAACTGGATGGAAGGGGCCATGGAGGACCTGCAGGACACGTTCATTGTTCACACCATTGAGGAGATCCAG
Seq A exon
GGATTGACCACAGCCCACGAACAGTTCAAAGCCACTTTGCCAGATGCCGACAAGGAGCGACAGGCCATCCTGGGAATCCACAATGAAGTCTCAAAGATTGTCCAGACGTACCACGTCAACATGGCAGGAACGAACCCTTACACTACAATCACCCCACAGGAGATCAATGGCAAATGGGAACAC
Seq C2 exon
GTGCGGCAGCTGGTTCCTAGAAGGGATCAAGCCCTAATGGAAGAACATGCTCGCCAGCAGCAAAATGAGCGACTTCGTAAGCAGTTTGGTGCACAAGCCAATGTCATTGGTCCCTGGATTCAGACCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'26-24,'26-23,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.295 C2=0.444
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGAGAAGCTACTGGAAACA
R:
ATGACATTGGCTTGTGCACCA
Band lengths:
247-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]