MmuEX6081852 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80174080-80176296:-
Coord C1 exon
chr12:80176156-80176296
Coord A exon
chr12:80174460-80174642
Coord C2 exon
chr12:80174080-80174214
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCATGCCATGGTCTATCTAGGGA
3' ss Score
6.1
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CGAACAGAGAAGCTGCTGGAAACCATCGACCAGCTCTACTTAGAGTACGCCAAGAGGGCTGCACCCTTCAACAATTGGATGGAGGGAGCCATGGAGGACCTGCAGGACACCTTCATCGTACATACCATCGAGGAGATCCAG
Seq A exon
GGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCGGATGCAGACAAGGAGCGCCTCGCCATTCTGGGCATCCACAATGAAGTGTCCAAGATCGTCCAGACCTATCATGTCAACATGGCAGGCACCAACCCCTATACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCAT
Seq C2 exon
GTACGGCAGCTAGTGCCCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGCCAATGTCATTGGGCCCTGGATCCAGACCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'72-30,'72-28,75-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAACCATCGACCAGCTC
R:
ATCCAGGGCCCAATGACATTG
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types