RnoEX0006333 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103383042-103385001:-
Coord C1 exon
chr6:103384861-103385001
Coord A exon
chr6:103383389-103383571
Coord C2 exon
chr6:103383042-103383176
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCATGCCATTGTCTATCCAGGGA
3' ss Score
7.83
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CGAACAGAGAAGCTGCTGGAGACCATCGACCAGCTATACTTGGAGTACGCCAAGAGGGCTGCACCCTTCAACAACTGGATGGAGGGAGCCATGGAGGACCTTCAAGACACCTTCATCGTACATACCATTGAGGAGATCCAG
Seq A exon
GGACTGACCACAGCCCATGAGCAGTTCAAGGCTACCCTCCCGGATGCAGACAAGGAGCGCCTGGCCATCCTGGGCATCCACAATGAAGTGTCCAAGATTGTCCAGACCTATCATGTCAACATGGCAGGCACCAACCCCTATACAACCATCACACCTCAGGAGATCAATGGCAAATGGGACCAT
Seq C2 exon
GTACGGCAGCTGGTGCCCCGGAGGGACCAGGCTCTAACAGAGGAGCACTCGAGGCAGCAGCACAACGAGAGGTTACGCAAGCAGTTTGGGGCACAAGCCAATGTCATCGGACCCTGGATCCAGACCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'31-22,'31-21,32-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
A:
PF0043516=Spectrin=FE(53.6=100)
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCATCGACCAGCTA
R:
TCTTGGTCTGGATCCAGGGTC
Band lengths:
256-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]