BtaEX6054964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85524950-85525822:-
Coord C1 exon
chr10:85525680-85525822
Coord A exon
chr10:85525481-85525584
Coord C2 exon
chr10:85524950-85525025
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTCCCTCCCCCAGTGG
3' ss Score
10.88
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
ACGGATCAATGTGGGCTCCCGGTTCCAAGCGGAAATCCCCTCGATGAGGGACCGTGCCCTGGCTGCTGCAGACCCCCACAAGGCTGACTTGGTGTGGCAGCCATGGGAGGTCCTGGAGAGCAGCCGGGAGAAGCAGAGGCAAG
Seq A exon
TGGAAGACCTGCTGACAGCTGCCTGCTCCAGCATTTTCCCTGGAGCCGGCACCAACCAGGAGCTGGCCCTGCACTGTCTGCACGAGTCCAGGGGAGACATCCTG
Seq C2 exon
GAAACGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGTCCCCATAACCACCCGCTGGCAACTTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'13-6,'13-4,14-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
PF0144819=ELM2=PD(19.0=31.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCAATGTGGGCTCCC
R:
TGTGTAGTGATAAGTTGCCAGCG
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]