RnoEX6029319 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107642820-107643878:-
Coord C1 exon
chr6:107643736-107643878
Coord A exon
chr6:107643529-107643632
Coord C2 exon
chr6:107642820-107642895
Length
104 bp
Sequences
Splice sites
3' ss Seq
AATGCTTCTGCTGAGTTCAGTGG
3' ss Score
0.34
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACGAATCAACGTCGGCACCCGGTTCCAAGCAGAAATCCCCACAATGAGAGACAGATCCCTGGCAGCCGCAGACCCCCATAAGGCTGACTTGGTGTGGCAGCCTTGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGGCAAG
Seq A exon
TGGATGACCTGCTGACGGCCGCCTGTTCAAGTATTTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTG
Seq C2 exon
GAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCCCCACAATCACCCACTGGCTACCTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'16-13,'16-12,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
PF0144819=ELM2=PD(19.0=31.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATCAACGTCGGCACC
R:
TGTGTAGTGATAGGTAGCCAGTGG
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]