DreEX6045146 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25991860-25992920:-
Coord C1 exon
chr20:25992790-25992920
Coord A exon
chr20:25992583-25992686
Coord C2 exon
chr20:25991860-25991935
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTGTTTTTGCAGTTG
3' ss Score
10.15
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCACATAAACATCGGCTCAAAGTACCAAGCAGAGATTCCTGAACTCTTGGATCGTTCATCAGCCTTAAAGGACCAGCATAAAGCCACTTTAGTTTGGCAGCCTGAGTCCTCTGCCTCCCAAGAAACAAGAG
Seq A exon
TTGATAATCTGATGAACCTGGTCTGTTCCAGTGTAATGTATGGGGGAGGGACAAACACAGAGCTCGCAATGCACTGCCTGCATGAGTGCAAAGGTGATGTCATG
Seq C2 exon
GAAGCTTTGGAAATGATGATGCTGAAAAATCCCATCTTCTCCTGGAACCACCAACTAGCCAATTACCATTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'8-8,'8-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(77.8=93.3)
A:
PF0144819=ELM2=PD(20.4=31.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATAAACATCGGCTCAAAGT
R:
TAATGGTAATTGGCTAGTTGGTGGT
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]