GgaEX1022252 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25427555-25430857:+
Coord C1 exon
chr5:25427555-25427697
Coord A exon
chr5:25428542-25428645
Coord C2 exon
chr5:25430769-25430857
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGGTATCTCTGTGGGAATAGTGG
3' ss Score
1.97
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCGTATAAATGTAGGAACTCGCTTTCAGGCAGAAATCCCTTCACTCCAAGACAGATCTCTGGCAGCAGCTGATGAACATAAAGCAGAGCTTGTGTGGCAGCCATGGGGTGACCTGGAAACCAACAGAGTCACCCAACAGAATG
Seq A exon
TGGAAAGCCTGCTAGCTGCTGCCTGCTCAAGCATTTTTCCTGGGGGTGGAACCAACCAGGAGCTGGCACTGCATTTCTTACATGAAGAAAAGGGAAGCGTTCTG
Seq C2 exon
GATCAGACAGTTGGAAAGTTGCTGAAAAGAAGCTTTTCAACAAAGGCATTGCAATCTACAAGAAGGACTTTTTCTTGGTCCAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
PF0144819=ELM2=PD(19.0=31.4)
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTAGGAACTCGCTTTCAGGC
R:
CAGCTTTTGGACCAAGAAAAAGT
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]