BtaEX6055031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86236766-86270887:-
Coord C1 exon
chr10:86270641-86270887
Coord A exon
chr10:86239020-86239210
Coord C2 exon
chr10:86236766-86236936
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGCTTGTCTCCCCAGGAC
3' ss Score
11.68
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CCGTGTGCCAGCCACCCTGCCAGAACCGGGGCTCCTGCAGCCGGCCCCAGCTCTGTGTGTGCCGCTCAGGCTTCCGCGGAGCCCGCTGCGAAGAGGTCATTCCTGAGGAGGAATTCGACCCCCAGAACTCCAGGCCAGCACCCCGACGCTCGGCCGAGGGACCCCCCAGCCTGCGCAGGAGCAGTGTGGCCAGAGAAAGCACCACGGCCAGAGTGCGCCCCCCAGCGCCACAGCTGCAGCGGGCCAG
Seq A exon
GACCCTGAGTGGGCTCAGCCAGACCCGCTCCTCCCAGCAGCATGTGGGGCTGTCCCAGACCACCCGACTTTATCCAGCCCCTGCGGCCAGTGGCCAGCTGACCTCCAATGCCCTGCCCATGGGGCCAGGTCCTGAGCGGAGGGATGGTGCCCCACAGGCAGCATATCTGGACCGCCCGTCATCCTCCTGGG
Seq C2 exon
GGCTGAATCTCACGGAGAAAATCAAGAAGATCAAGATCGTCTTCACTCCCACCATCTGCAAGCAGACCTGTGCCCGTGGGCGCTGTGCCAACAGCTGCGAGCGTGGCGACACCACTACCCTGTACAGCCAGAGCGGCCACGGGCATGACCCCAAGTCTGGATTCCGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'2-5,'2-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.908 C2=0.138
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=33.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTGTGCCGCTCAG
R:
TGCAGATGGTGGGAGTGAAGA
Band lengths:
257-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]