GgaEX0015297 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37242365-37260157:-
Coord C1 exon
chr5:37259920-37260157
Coord A exon
chr5:37243832-37244013
Coord C2 exon
chr5:37242365-37242535
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTTCTCTTCTACAGGAC
3' ss Score
11.65
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTGTTTGTGACCCACCGTGCCAGAACAAGGGCTCCTGCAGCCGGCCCCATGTCTGTACCTGTCGCTCGGGCTTCCAGGGCTCCAGGTGTGAAGAAGTCGTCCCTGAGCAAGAGTACCACCCACCCAGCATCGCCCTGCAGCCCCCTGCGGGCTCCCTGCGGAGGAGGACTGGCACAGCTGAGCGGGATGCCTCCCCACGAGAGGCTCAGGCACCTGTCCCACGACATGCACCCACCAG
Seq A exon
GACTCAGAGCAGAATTGGCTCTCCTGTCTCAACCCAGCATACAGGGCCGTCACGAACTGTCCGGCGCTACCCCGCCAGCAATGGCCAGCTCACGTCTAACACGCTGCCCAATGGGCACGGGCATGAACAGGGCAGCTCTGGGCCAAATGCAGCTTTCCAGGAGCACACGTTGGCTGCAAGGG
Seq C2 exon
GGGCAAACCTGACAGAGAAGATTAGGAAAATAAAAATCATCTTCACACCCACCATCTGCAAACAGACATGCCGGAATGGGCGCTGCTACAACAGCTGTGAGAAGGGAGACACCACCACTCTCTACAGCCAAGGGGGACATGACCACGACCCCAAGTCTGGCTTCCGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=1.000 C2=0.224
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=37.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAGCAAGAGTACCACC
R:
AGTGGTGGTGTCTCCCTTCTC
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]