RnoEX0051372 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108551750-108574164:-
Coord C1 exon
chr6:108573912-108574164
Coord A exon
chr6:108552809-108552990
Coord C2 exon
chr6:108551750-108551920
Length
182 bp
Sequences
Splice sites
3' ss Seq
GGCCATGCTTGTCCCCACAGGAC
3' ss Score
10.23
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
CTGTGTGTCAGCCTCCCTGTCAGAACCGGGGCTCCTGCAGCCGGCCCCAGCTCTGCATCTGCCGTTCTGGCTTCCGTGGGGCACGCTGCGAGGAGGTCATCCCTGAGGAGGAGTTTGACCCTCAGAATGCCAGGCCTGTGCCCAGACGCTCAGTGGAGGGAGCACCTGGCCCTCACAGGAGCAGCGAGGCCAGAGGAAGTCTAGTGACCAGAATACAGCCGCTGCCACCACCACTACCACCACCTCCATCTAG
Seq A exon
GACCCTCAGCCAGACCCGTCCCCTGCAGCAGCATGCAGGACTGTCCAGAACAGTTCGTCGTTATCCGGCCACTGGTACCAATGGCCAACTGATGTCCAACGCTCTGCCTTCAGGACCAGGACCTGAGCTGAGAGACAGCAGCCAACAGGCAGCACACATGAACCATCTCTCACACCCCTGGG
Seq C2 exon
GGCTGAACCTCACCGAGAAAATCAAGAAGATTAAGGTCGTCTTCACTCCCACCATCTGCAAGCAGACCTGTGCCCGGGGCCGCTGTGCCAACAGCTGTGAGAAGGGTGACACCACCACCCTGTACAGTCAGGGCGGCCATGGGCATGACCCCAAGTCTGGCTTCCGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'4-5,'4-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=0.988 C2=0.138
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=32.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGAGGAGTTTGACCCT
R:
CTTCTCACAGCTGTTGGCACA
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]