GgaEX0015297 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40372714-40390506:-
Coord C1 exon
chr5:40390269-40390506
Coord A exon
chr5:40374181-40374362
Coord C2 exon
chr5:40372714-40372884
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTTCTCTTCTACAGGAC
3' ss Score
11.65
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTGTTTGTGACCCACCGTGCCAGAACAAGGGCTCCTGCAGCCGGCCCCATGTCTGTACCTGTCGCTCGGGCTTCCAGGGCTCCAGGTGTGAAGAAGTCGTCCCTGAGCAAGAGTACCACCCACCCAGCATCGCCCTGCAGCCCCCTGCGGGCTCCCTGCGGAGGAGGACTGGCACAGCTGAGCGGGATGCCTCCCCACGAGAGGCTCAGGCACCTGTCCCACGACATGCACCCACCAG
Seq A exon
GACTCAGAGCAGAATTGGCTCTCCTGTCTCAACCCAGCATACAGGGCCGTCACGAACTGTCCGGCGCTACCCCGCCAGCAATGGCCAGCTCACGTCTAACACGCTGCCCAATGGGCACGGGCATGAACAGGGCAGCTCTGGGCCAAATGCAGCTTTCCAGGAGCACACGTTGGCTGCAAGGG
Seq C2 exon
GGGCAAACCTGACAGAGAAGATTAGGAAAATAAAAATCATCTTCACACCCACCATCTGCAAACAGACATGCCGGAATGGGCGCTGCTACAACAGCTGTGAGAAGGGAGACACCACCACTCTCTACAGCCAAGGGGGACATGACCACGACCCCAAGTCTGGCTTCCGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'1-6,'1-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=1.000 C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAGCAAGAGTACCACC
R:
AGTGGTGGTGTCTCCCTTCTC
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]