MmuEX6082095 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84830643-84853939:-
Coord C1 exon
chr12:84853687-84853939
Coord A exon
chr12:84831748-84831923
Coord C2 exon
chr12:84830643-84830813
Length
176 bp
Sequences
Splice sites
3' ss Seq
GACTGTGGTTATCTCCACAGGCG
3' ss Score
9.66
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTGTGTGTCAGCCTCCCTGTCAGAACCGAGGCTCCTGCAGCAGGCCCCAGGTCTGTATCTGCCGTTCTGGCTTCCGTGGGGCGCGCTGTGAGGAGGTCATCCCTGAGGAGGAATTTGACCCTCAGAATGCCAGGCCTGTGCCCAGACGCTCAGTGGAGAGAGCACCCGGTCCTCACAGAAGCAGTGAGGCCAGAGGAAGTCTAGTGACCAGAATACAGCCGCTGGTACCACCACCATCACCACCTCCATCTCG
Seq A exon
GCGCCTCAGCCAGCCCTGGCCCCTGCAGCAGCACTCAGGGCCGTCCAGGACAGTTCGTCGGTATCCGGCCACTGGTGCCAATGGCCAGCTGATGTCCAACGCTTTGCCTTCAGGACTCGAGCTGAGAGACAGCAGCCCACAGGCAGCACATGTGAACCATCTCTCACCCCCCTGGG
Seq C2 exon
GGCTGAACCTCACCGAGAAAATCAAGAAAATCAAAGTCGTCTTCACCCCCACCATCTGCAAGCAGACCTGTGCCCGGGGACGCTGTGCCAACAGCTGTGAGAAGGGTGACACCACCACCTTGTACAGTCAGGGTGGCCATGGGCATGACCCCAAGTCTGGCTTCCGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.950 C2=0.138
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=32.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGTATCTGCCGTTCTGG
R:
GTGGGGGTGAAGACGACTTTG
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types