BtaEX6055035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86221567-86235239:-
Coord C1 exon
chr10:86234953-86235239
Coord A exon
chr10:86233809-86233911
Coord C2 exon
chr10:86221567-86221641
Length
103 bp
Sequences
Splice sites
3' ss Seq
CATGGTCCTTTTTTTTCCAGTGT
3' ss Score
9.47
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTCGGTGAACCCCTCCTTGGTGAACGTGCACATCCGCCACCCGCCTGAGGCCTCGGTGCAGATCCACCAGGTGGCTCGGGTGCGAGGCGAGGCCGAGGAGGCCCCGGAGGAGAACAGCGTGGAGACCAGACCATCGCCCCGGCTCCCCGCCGGCCCCGGCCCCGGCCGCTGGGACAGCAACCGCATCCCCGCCCGGTCCGGAGAAGCTCCCCGGCTACCTCCCCCAGTGGTGCCCAGGACTCCGGCCCTTCTGGGCCGATGCTACCTAAGCACTTTAAACGGACAG
Seq A exon
TGTGCCAATCCCCTGCCGGAGCTGACGGCCCACGAGGACTGCTGCGGCAGTGTGGGGGCCTTCTGGGGGGTGACCTCCTGTGCCCCGTGTCCACCCAGACCAG
Seq C2 exon
CCTCCCCGGTGATTGAAAATGGCCAGCTGGAGTGTCCCCAGGGGTACAAGAGACTGAATCTCACTCACTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'6-11,'6-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.6=1.0)
A:
PF0068312=TB=FE(87.2=100)
C2:
PF0068312=TB=PD(5.1=7.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACAGCGTGGAGACCAGA
R:
TCGCAGTGAGTGAGATTCAGT
Band lengths:
250-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]