RnoEX6029356 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108534956-108550441:-
Coord C1 exon
chr6:108550158-108550441
Coord A exon
chr6:108549456-108549558
Coord C2 exon
chr6:108534956-108535030
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGGTCTCTTTTCCAGTGT
3' ss Score
9.88
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTCTGTGAACCCCTCGCTGGTGAAGGTACAAATTCACCACCCGCCTGAGGCCTCCGTGCAGATCCACCAGGTGGCCCGGGTCCGGGGTGAGGTGGACCCTGTGCCAGAGGACAACAGTGTGGAGACCAGAGCCTCTCATCGCCCCCATGGCAGCTCAGGCCACAGCCACTGGGCCAGCAACAGCATACCCGCTCGGGCTGGAGAGGCCCCTCGGCCACCACCAGTGCCGTCCAGGCATTATGGACTTCTGGGCCAGTGTTACCTGAGCACGGTGAATGGACAG
Seq A exon
TGTGCTAACCCCCTAGGGGAGCTGACTTCTCAGGAAGACTGCTGTGGCAGTGTGGGGACCTTCTGGGGGGTGACTTCCTGTGCCCCATGCCCACCCAGACCAG
Seq C2 exon
CCTTCCCCGTGATTGAAAACGGCCAGCTGGAGTGTCCCCAAGGGTATAAGAGACTAAACCTCAGCCATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.6=1.1)
A:
PF0068312=TB=FE(89.5=100)
C2:
PF0068312=TB=PD(2.6=3.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACAGTGTGGAGACCA
R:
TGGCAATGGCTGAGGTTTAGT
Band lengths:
249-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]