GgaEX0015305 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37230865-37240293:-
Coord C1 exon
chr5:37240028-37240293
Coord A exon
chr5:37238351-37238453
Coord C2 exon
chr5:37230865-37230939
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCTCTCTCTTAACAGTGC
3' ss Score
12.66
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTCCCTGAACCCTTCCCTGGTGAACGTCCATATCAACCACCCTCCAGAAGCCACCGTGCAGATTCACCAGGTGGCCAGGGTGCGGGGTGACTCAGAGGTGTCAGAGGAGAACAGCGTGGAGGCAGTGCTGGTGCCTCAGATGGCCGCGGTGCCCTGGTACACCTACAGCAATGGGAACGGCAACAGCATCGCCACTGAGGGAGGCCAACAGCAGAGACCCCCAGGGTTGCTGGGGAGGTGCTTTCGGGAAGCTCTCCATGGGCAG
Seq A exon
TGCACCAACCCACTGCCAGGGTTGACCCTGCTGGAGGACTGCTGCGGCAGCGTGGGGCTCTTCTGGGGGGTGGACAGGTGCCTGGCCTGCCCCCCTCGGCCAG
Seq C2 exon
CACACCCCGTCATTGAGAACGGACAGGTGGAGTGTCCCCAGGGATACAAGAGGCTGAATAGGAGCCACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.348 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.5=1.1)
A:
PF0068312=TB=FE(85.0=100)
C2:
PF0068312=TB=PD(7.5=11.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCACCGTGCAGATTC
R:
CTGTCCGTTCTCAATGACGGG
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]