MmuEX7007577 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84815962-84829417:-
Coord C1 exon
chr12:84829134-84829417
Coord A exon
chr12:84828448-84828550
Coord C2 exon
chr12:84815962-84816036
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGGTCTCTTTTCCAGTGT
3' ss Score
9.8
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTCTGTGAACCCCTCGCTGGTGAAGGTGCAAATTCATCACCCGCCTGAGGCCTCTGTGCAGATTCACCAGGTGGCCCGGGTCCGGGGTGAGCTGGACCCCGTGCTGGAGGACAACAGTGTGGAGACCAGAGCCTCTCGTCGCCCCCACGGCAACCTAGGCCACAGCCCCTGGGCCAGCAACAGCATACCCGCTCGGGCCGGAGAGGCCCCTCGGCCACCACCAGTGCTGTCTAGGCATTATGGACTTCTGGGCCAGTGTTACCTGAGCACGGTGAATGGACAG
Seq A exon
TGTGCTAACCCCCTAGGGGAGCTGACTTCTCAGGAGGACTGCTGTGGCAGTGTGGGGACCTTCTGGGGGGTGACCTCCTGTGCTCCCTGCCCACCCAGACCAG
Seq C2 exon
CCTTCCCAGTGATTGAAAATGGCCAGCTGGAGTGTCCCCAAGGATACAAGAGACTGAACCTCAGCCACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.004 C2=0.011
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(2.6=1.1)
A:
PF0068312=TB=FE(89.5=100)
C2:
PF0068312=TB=PD(2.6=3.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACAGTGTGGAGACCA
R:
CTTGGCAGTGGCTGAGGTTC
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types