BtaEX6055037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86216097-86221641:-
Coord C1 exon
chr10:86221567-86221641
Coord A exon
chr10:86217942-86218064
Coord C2 exon
chr10:86216097-86216261
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATCTCCCTGCTCCCCACAGATG
3' ss Score
11.43
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
CCTCCCCGGTGATTGAAAATGGCCAGCTGGAGTGTCCCCAGGGGTACAAGAGACTGAATCTCACTCACTGCGAAG
Seq A exon
ATGTCAATGAGTGCCTGACGCTGGGCCTGTGCGAGGACTCGGAGTGTGTGAACACGAGGGGCAGCTACCTGTGTACCTGCAGACCCGGCCTCCTGCTGGATCCGTCCAGGAGCCGCTGTGTGT
Seq C2 exon
CGGACAAGGCCGTCTCCATGCAGCAGGGGCTGTGCTACCGGCTGCTGGGGCCCGGCACCTGCGCCCTGCCTTTGGCCCAGCGGATCACCAAGCAGATATGCTGCTGCAGCCGCGTGGGCAAAGCCTGGGGCAGCCTGTGTGAGAAATGCCCCCTGCCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(5.1=7.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PU(86.0=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGGTGATTGAAAATGGC
R:
CAGGGGGCATTTCTCACACAG
Band lengths:
228-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]