GgaEX0015306 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40355036-40359735:-
Coord C1 exon
chr5:40359661-40359735
Coord A exon
chr5:40355533-40355655
Coord C2 exon
chr5:40355036-40355200
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCCTCTTCCCCACAGATA
3' ss Score
12.98
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CACACCCCGTCATTGAGAACGGACAGGTGGAGTGTCCCCAGGGATACAAGAGGCTGAATAGGAGCCACTGCCAAG
Seq A exon
ATATCAACGAATGCTTGATGCAGGGCTTGTGCAAAGACGCCAAGTGTTTGAATACCCGTGGCAGCTTCCGCTGTACTTGCAGACCTGGCACCATGTTGGACCCCTCCCGCAGCCACTGCATCT
Seq C2 exon
CTGACAAAGCAGTGTCGATGGAGCAGGGGCTGTGTTACCGCTCAGCAGCTGGAGGTGTGTGCTCCTTCCCCCTCTCCCACCGAATCACTCAGCAGATCTGCTGCTGCAGCCGCGTCGGCAAGGGCTGGGGCAAGAACTGTGAGGAATGCCCTGTGCCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'9-14,'9-13,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(7.5=11.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PU(86.0=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCCCGTCATTGAGAACG
R:
CACAGGGCATTCCTCACAGTT
Band lengths:
230-353
Functional annotations
There are 0 annotated functions for this event