GgaEX0015306 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37225117-37230939:-
Coord C1 exon
chr5:37230865-37230939
Coord A exon
chr5:37226737-37226859
Coord C2 exon
chr5:37225117-37225347
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCCTCTTCCCCACAGATA
3' ss Score
12.98
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CACACCCCGTCATTGAGAACGGACAGGTGGAGTGTCCCCAGGGATACAAGAGGCTGAATAGGAGCCACTGCCAAG
Seq A exon
ATATCAACGAATGCTTGATGCAGGGCTTGTGCAAAGACGCCAAGTGTTTGAATACCCGTGGCAGCTTCCGCTGTACTTGCAGACCTGGCACCATGTTGGACCCCTCCCGCAGCCACTGCATCT
Seq C2 exon
GAGCGTTCAAGGAGATTTGCCCAGCAGGACACGGCTATACCTACTCCAGCTCTGACATCCGCCTTTCCATGAGGAAAGCAGAGGCAGAAGAGCTGCCCCTAAGCCTGGAAGAGCACAGTGAGAGCAGCAACTGGACGTTAGACTGGGCAGCAAGGAGACAGCGGCTGCAGGACAGTTTGCATGGGAGTGTCCTGGAGGCATTGCCCCACCCCGACATCTCAGCAGGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(7.5=11.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PD(11.6=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAACGGACAGGTGGAGT
R:
ACACTCCCATGCAAACTGTCC
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]