RnoEX0051363 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108530123-108535030:-
Coord C1 exon
chr6:108534956-108535030
Coord A exon
chr6:108532357-108532479
Coord C2 exon
chr6:108530123-108530287
Length
123 bp
Sequences
Splice sites
3' ss Seq
AATTCCTCCACTCCCTGCAGACA
3' ss Score
9.1
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CCTTCCCCGTGATTGAAAACGGCCAGCTGGAGTGTCCCCAAGGGTATAAGAGACTAAACCTCAGCCATTGCCAAG
Seq A exon
ACATCAATGAGTGCCTGACCCTGGGCCTGTGCAAGGATTCAGAGTGTGTGAACACCAGGGGCAGCTACCTGTGCACCTGCAGGCCCGGCCTCATGCTGGATCCATCAAGGAGCCGCTGTGTAT
Seq C2 exon
CGGACAAGGCTGTCTCCATGAAACAGGGACTCTGTTACCGGTCACTGGTGTCTGGCACCTGCACCCTGCCTTTGGTACAACGGATCACCAAGCAGATATGCTGTTGCAGCCGTGTGGGCAAAGCCTGGGGCAGCAAATGTGAACACTGCCCCCTGCCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(2.6=3.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PU(86.0=66.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCCGTGATTGAAAACG
R:
AGGGGGCAGTGTTCACATTTG
Band lengths:
229-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]