MmuEX6082098 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86150535-86156986:-
Coord C1 exon
chr12:86156912-86156986
Coord A exon
chr12:86154190-86154312
Coord C2 exon
chr12:86150535-86150699
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCCACACCCTGCAGATA
3' ss Score
8.72
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCTTCCCAGTGATTGAAAATGGCCAGCTGGAGTGTCCCCAAGGATACAAGAGACTGAACCTCAGCCACTGCCAAG
Seq A exon
ATATCAATGAGTGCCTGACCCTGGGCCTCTGCAAGGACTCGGAGTGCGTGAACACCAGGGGCAGCTACCTGTGCACCTGCAGGCCTGGCCTCATGCTGGATCCGTCAAGGAGCCGCTGCGTAT
Seq C2 exon
CGGACAAGGCTGTCTCCATGCAGCAGGGACTATGCTACCGGTCACTGGGGTCTGGTACCTGCACCCTGCCTTTGGTTCATCGGATCACCAAGCAGATATGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGTAGCACATGTGAACAGTGTCCCCTGCCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(2.6=3.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PU(86.0=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGTGATTGAAAATGGC
R:
CAGGCAGGGGACACTGTTCA
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: