BtaEX6055353 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93908077-93913423:-
Coord C1 exon
chr10:93913349-93913423
Coord A exon
chr10:93912235-93912407
Coord C2 exon
chr10:93908077-93908205
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACATTTAACCGCTATTTCAGGCT
3' ss Score
5.71
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGAAGCGACCATTGTAGGTGAGAATGAAACTTATCCCAGAGCTTTGCTTCACTGGAACCGGGCCGCCTCACAAG
Seq A exon
GCTATACTGTGGCTAGAATCAAGCTTGGAGACTACCACTTCTATGGCTTCGGCACGGATGTGGATTACGAGACTGCGTTTATCCACTATCGTCTCGCGTCTGAGCAGCAGCACAGCGCACAGGCCATGTTTAACCTGGGCTACATGCATGAGAAAGGACTGGGCATTAAACAG
Seq C2 exon
GATATTCATCTTGCAAAGCGTTTTTATGACATGGCAGCCGAAGCCAGCCCAGATGCTCAAGTACCAGTCTTCCTGGCACTCTGCAAGTTGGGCGTTGTCTATTTCTTGCAGTACATACGGGAAACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
C2:
PF082387=Sel1=PD(42.9=34.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCGACCATTGTAGGTGA
R:
TTGTTTCCCGTATGTACTGCA
Band lengths:
202-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]