DreEX6045402 @ danRer10
Exon Skipping
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27099684-27100782:+
Coord C1 exon
chr20:27099684-27099758
Coord A exon
chr20:27100277-27100449
Coord C2 exon
chr20:27100654-27100782
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGATTTGATTTTGTTAACAGGTT
3' ss Score
8.07
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGGGGTCGCAGATCTTCAATGAAAATGAAACATACCCACGGGCTTTGCTTCATTGGACCAGAGCAGCTGCTCAAG
Seq A exon
GTTACACCGTTGCCCGAATCAAGCTGGGCGACTACCATTTCTATGGCTATGGCACTGATGTAGACTATGAGACTGCAGTGATTCACTATCGGCTGGCCTCTGAGCAGCAGCATAGTGCACAGGCTATGTTCAACCTGGGTTATATGCATGAGAAGGGCCTTGGGATCAAACAG
Seq C2 exon
GACATTCATCTGGCTAAACGTTTCTATGACATGGCTGCAGAAGCCAGTCCTGATGCCCAAGTTCCTGTGTTCCTGGCCCTGTGCAAGCTAGGCCTTGTTTATGCACTACAGTACTTGCAGGATCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-'20-21,'20-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
C2:
PF082387=Sel1=PD(42.9=34.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTCGCAGATCTTCAATG
R:
TGAGATCCTGCAAGTACTGTAGTG
Band lengths:
202-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]