GgaEX1051575 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40220334-40224789:-
Coord C1 exon
chr5:40224715-40224789
Coord A exon
chr5:40223452-40223624
Coord C2 exon
chr5:40220334-40220462
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCTTTCTTTGAAGGAT
3' ss Score
10.47
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGAAGCTAGCATAGTAGGAGAAAATGAAACATATCCTCGAGCATTGCTTCACTGGAATAGAGCAGCTTCTCAAG
Seq A exon
GATATACAGTTGCAAGAATTAAACTTGGAGATTACCATTTCTATGGATTTGGTACTGATGTTGATTATGAAACAGCATTTATTCACTATCGACTGGCATCAGAGCAACAGCACAGTGCTCAAGCAATGTTTAATCTGGGCTACATGCATGAGAAGGGATTGGGCATCAAGCAG
Seq C2 exon
GATATTCATCTTGCAAAACGATTCTATGATATGGCTGCTGAAGCAAGCCCAGATGCCCAGGTTCCAGTCTTCCTAGCTCTTTGCAAGCTTGGAGTGATATACGCTGTGCAGTATATACGAGAAATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'24-32,'24-28,25-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
C2:
PF082387=Sel1=PD(42.9=34.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTAGCATAGTAGGAGAAAA
R:
TCATTTCTCGTATATACTGCACAGCG
Band lengths:
202-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]