RnoEX6029504 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115578546-115581202:-
Coord C1 exon
chr6:115581128-115581202
Coord A exon
chr6:115580355-115580527
Coord C2 exon
chr6:115578546-115578674
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTATTTTTATTTCAGGTT
3' ss Score
10.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTGCTGCATTGGAATAGGGCCGCCTCCCAAG
Seq A exon
GTTATACTGTGGCTAGAATTAAACTTGGAGACTACCATTTCTATGGATTTGGCACTGATGTGGATTACGAGACTGCGTTTATTCATTACCGCCTGGCCTCAGAGCAACAGCACAGTGCCCAAGCTATGTTTAACCTGGGGTACATGCATGAGAAGGGCCTAGGCATTAAACAG
Seq C2 exon
GATATCCACCTGGCAAAACGCTTTTATGACATGGCAGCCGAAGCCAGCCCAGATGCACAAGTACCTGTATTCCTCGCACTCTGCAAATTAGGTGTCGTCTATTTCTTACAGTACATACGGGAAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'33-30,'33-28,35-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
C2:
PF082387=Sel1=PD(42.9=34.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAACCATTGTAGGTGAGA
R:
GTTTGCTTCCCGTATGTACTGT
Band lengths:
203-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]