MmuEX6082376 @ mm9
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:93050317-93053133:-
Coord C1 exon
chr12:93053059-93053133
Coord A exon
chr12:93052272-93052444
Coord C2 exon
chr12:93050317-93050445
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTATTTTTATTTCAGGTT
3' ss Score
10.8
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAG
Seq A exon
GTTACACTGTGGCTAGAATTAAGCTTGGAGACTACCACTTCTATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTGGGCTACATGCACGAGAAGGGCCTAGGCATTAAACAG
Seq C2 exon
GACATTCACCTTGCAAAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTCGCACTCTGCAAATTAGGTGTCGTCTATTTCTTACAGTACATACGGGAAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'23-22,'23-20,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(51.4=31.0)
C2:
PF082387=Sel1=PD(42.9=34.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAACCATTGTAGGTGAGA
R:
GTTTGCTTCCCGTATGTACTGT
Band lengths:
203-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: