BtaEX6055990 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21778854-21781907:+
Coord C1 exon
chr12:21778854-21778915
Coord A exon
chr12:21780685-21780765
Coord C2 exon
chr12:21781802-21781907
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACTGTCCCCTCTTTTATAGGAC
3' ss Score
10.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGAACTGGAACTATGGTCTGTGCCTACCTTCTTGCCAGTGAGATATTTGCCACTGCGGAG
Seq A exon
GACAGCCTGTATTATTTTGGAGAACGGCGAACAGATAAATCCACTAGCAGTAAATTTCAGGGAATAGAGACTCCTTCTCAG
Seq C2 exon
AATAGATTCGTTGGATATTTTGCAATGGTGAAAAATATCTACAATTTGACTCTTCCTCCAATAAAAAAACTCACGATCAAAAAATTCGTGATTTATTCAATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(15.7=100)
A:
PF0078215=DSPc=PD(17.3=81.5)
C2:
PF104094=PTEN_C2=PU(12.5=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTGGAACTATGGTCTGTGC
R:
TTTTATTGGAGGAAGAGTCAAATTGT
Band lengths:
127-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]