MmuEX0048662 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22349326-22355571:+
Coord C1 exon
chr8:22349326-22349387
Coord A exon
chr8:22351443-22351523
Coord C2 exon
chr8:22355466-22355571
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGTTGTCCCGTTTCCTATAGGAA
3' ss Score
9.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTTTTAAATGCAAAG
Seq A exon
GAAAGTCTGTACTTTTTTGGAGAGCGGCGGACAGATAAAAGCAACAGCTCGAAGTTCCAAGGAATAGAGACCCCTTCTCAG
Seq C2 exon
AATAGATATGTGAAATATTTTGAAAAACTGAAAATTAACTACCAACTAACTCTCCCTCCCAAAAAAGTACTCGTGATAAAAAGATTGGTCGTTTATTCCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'28-24,'28-23,30-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF145661=PTPlike_phytase=PD(8.2=57.1)
A:
PF0078215=DSPc=PD(17.6=81.5)
C2:
PF104094=PTEN_C2=PU(12.6=47.2)
Main Skipping Isoform:
ENSMUST00000077194fB18591
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTGGAACCATGGTGTGT
R:
CATGAATGGAATAAACGACCAATCT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types