GgaEX1003680 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174777827-174779921:+
Coord C1 exon
chr1:174777827-174777888
Coord A exon
chr1:174778771-174778851
Coord C2 exon
chr1:174779816-174779921
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAAATAATCTTCCTATATAGGAG
3' ss Score
7.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTAGAACTGGAACAATGGTCTGTACCTGGCTTATACACAGTGACCAGTTTGAGAGTGCAAAG
Seq A exon
GAGAGTTTAGACTACTTTGGAGAGAGAAGAACTGACAGAACTATGAGTACCAAATTTCAAGGAGTTGAAACTCCATCCCAG
Seq C2 exon
AGTAGGTATGTTGGGTATTATGAGATCCTGAAAAACAAGTATAACTTCCAACTCCCACCAGAGAGACAACTCAAAATAAAAAACCTCAAAATCCACTCTATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(15.6=100)
A:
PF0078215=DSPc=PD(17.2=81.5)
C2:
PF104094=PTEN_C2=PU(12.3=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAACTGGAACAATGGTCTGT
R:
CATGTATAGAGTGGATTTTGAGGTTT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]