GgaEX1003680 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUX1]
Coordinates
chr1:169798395-169801199:+
Coord C1 exon
chr1:169798395-169798456
Coord A exon
chr1:169799339-169799419
Coord C2 exon
chr1:169801102-169801199
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAAATAATCTTCCTATATAGGAG
3' ss Score
7.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTAGAACTGGAACAATGGTCTGTACCTGGCTTATACACAGTGACCAGTTTGAGAGTGCAAAG
Seq A exon
GAGAGTTTAGACTACTTTGGAGAGAGAAGAACTGACAGAACTATGAGTACCAAATTTCAAGGAGTTGAAACTCCATCCCAG
Seq C2 exon
GAGTTGGGAAAGGCAATGGAACTGATATGAAGGTGCAGATAATAATGAAAAAGCAAGTTGTGTTGGAATGTGTGTGTGCCACACAAGGAAACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(15.6=100)
A:
PF0078215=DSPc=PD(17.2=81.5)
C2:
PF104094=PTEN_C2=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAACTGGAACAATGGTCTGT
R:
TTGCAGTTTCCTTGTGTGGCA
Band lengths:
159-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]