DreEX6088155 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24730669-24731309:+
Coord C1 exon
chr10:24730669-24730730
Coord A exon
chr10:24730827-24730907
Coord C2 exon
chr10:24731204-24731309
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCATCTCTCACAGGAG
3' ss Score
10.22
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTCGTACCGGCACAATGGTTTGCACATGGCTCATTGACAGCGATCAGTTTGAGAGTGCACAG
Seq A exon
GAGAGCCTGGATTACTTTGGAGAGAGACGGACTGATAAAAGCATGAGCTCCAAGTTTCAAGGTGTTGAAACTCCGTCTCAG
Seq C2 exon
AGCAGGTATGTTGGCTATTATGAGATCATGAAGAATCAGTACAACCGTCAGCTTCCTCCTCGGAAGAGCCTGAAAATCAAGAGCATCCGAATCCACTCCATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'16-19,'16-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(15.5=100)
A:
PF0078215=DSPc=PD(17.1=81.5)
C2:
PF104094=PTEN_C2=PU(12.3=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTACCGGCACAATGGTTT
R:
TGCGATGGAGTGGATTCGGAT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]