BtaEX6056000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015522 | MRPS31
Description
Bos taurus mitochondrial ribosomal protein S31 (MRPS31), mRNA. [Source:RefSeq mRNA;Acc:NM_001076015]
Coordinates
chr12:21854977-21862871:+
Coord C1 exon
chr12:21854977-21855143
Coord A exon
chr12:21858535-21858819
Coord C2 exon
chr12:21862716-21862871
Length
285 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTAATCTTTTCAGGAC
3' ss Score
11.32
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCTTCATCCGCCGTTGTTCCTAGTGTTGTTCGTTTCTCGGAGATGTTCCCGAGGGTCTCGGCGGTCCTCCCTTTTCGCCCCCTTTCCCGGCTCCCTCTGTGCTCCGCAGGCCCGGAGGCATCGGCGGCCACCGTTGTGCCCCTCGCTTCTCCGCATGGAACTGTCAG
Seq A exon
GACAAAATGTAATATCCAAAGATATTTTGGCACTAACAGCGTGATCTATAGCAAGAAAGATGATAAGTCTGTTCCAGCCTGTGAAATTTCCAAAGAAACGGAGAACCAAGGGAGTACAAAGGAGAATAAGAAAAAAGACTTGGTAAATATTATTAAGGGCATGAAAGTTGAATTAAGCACAGTAAATGTACAAACAACAAAGCCACCCAATAGAGGACAACTTAAAAGTTTGGAAGCTGCAATTCGCAGACTTCAAAAATCTCCGGAAGATGCCCCCCAAAAGAG
Seq C2 exon
CAAGTCCCTGAGCCCGGAGTTGGTGGCGGCTGCGACTGCAGTTGCTGACTCTCTCCCTTTTGACAAGCAGACCACCAAGTCGGAGCTGCTCAGGCAGCTCCGGCAGCACGAGGAAGACTCAAAGGCTCAGAAGGATGGAGAGAAACCCAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015522-'1-3,'1-1,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.552 C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
PF154331=MRP-S31=PU(17.5=54.2)
C2:
PF154331=MRP-S31=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCCGCCGTTGTTCCTA
R:
GCCTTTGAGTCTTCCTCGTGC
Band lengths:
292-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]