RnoEX6055982 @ rn6
Exon Skipping
Gene
ENSRNOG00000011839 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:RGD Symbol;Acc:1307668]
Coordinates
chr16:74484848-74496731:-
Coord C1 exon
chr16:74496382-74496731
Coord A exon
chr16:74489889-74490176
Coord C2 exon
chr16:74484848-74485006
Length
288 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATATGTCATTTCAGGAC
3' ss Score
9.46
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TGACACTGAGTCCACCAAAGCGGAAACAGGCAGGATCCATCCAGTCAAAGATTCCGGAACGTAATTATTGGTATCTGTTTCCTACCGGAAGCCAAAAGGAGAGGAACAGTGCAGGCGGAAAACATCTCGGGGAACATTTTTGGCAGAGGGACAAACTAGCTGCTTTGTGCGCGTCTTTGAGTTTGTGTTTCCGGTTGTGCTCTTGCTTGAGTTTGTTTTTACACGATGCTCCACAGAATTCCAGCGTTTATACGTCCTCGTCCTTTCTCGGGCCTCCCTTTGTCCTGTGGAAACAGGGAGGTCTCGGTGGCTGCGAGTGTGCTACCCGCGGCTGGGTCCGGAGCTGTCAG
Seq A exon
GACAGAAAATACTATCCAAAGACATTTCTGCACTAGCAGATCCATCTGTAGTAAGAAAGATGACCAGTCTGTTCCAGCCAATGAAACTTCCCAGAAGGCAGCGGAGAGCCAAGGCGAGGGAAAGGAGACTTTGAAGAAAAACCTGCTGGACGTTATTAAGGACATGAAAGTGCAACTGAACACAGCAAATGTAAAAACAACAAAGCCGCGTGGCAGACAACCTCCTGCCCATCTGGAGACCGCAGTCGGCAGGCTTCAGAAGGCCCTGGGAGAACCTCCAAGGAAGAG
Seq C2 exon
AAATGAGTTCCTGAGTCCTGAGTTGGTGGCAGCGGCATCTGCTGTTGCGGATTCTCTGCCTTTCGACAAGCAGACGACCAAGTCAGAGCTGCTCAAGCAGCTGCAGCAACACGAGGAAGAGTCAAGGGCTCAGACAGACAGACAGAAGCGCAGGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011839-'1-3,'1-2,10-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.749 C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
PF154331=MRP-S31=PU(17.6=53.6)
C2:
PF154331=MRP-S31=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGGTTGTGCTCTTGCTT
R:
CTGTCTGTCTGTCTGAGCCCT
Band lengths:
308-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]