DreEX0047477 @ danRer10
Exon Skipping
Gene
ENSDARG00000057855 | mrps31
Description
mitochondrial ribosomal protein S31 [Source:ZFIN;Acc:ZDB-GENE-030131-3715]
Coordinates
chr5:23646667-23650264:-
Coord C1 exon
chr5:23650082-23650264
Coord A exon
chr5:23649394-23649828
Coord C2 exon
chr5:23646667-23646816
Length
435 bp
Sequences
Splice sites
3' ss Seq
TATAAACAAACTGTTTTCAGGAC
3' ss Score
7.01
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGTTGTCAGCGCTGCACAGGGAAACGTGCATGGACGACATTGAGGTCTTGTAAGAGGGGCAAATATGTACAGAAGATTGTTAATAAATATACATCAGGTTCGAAATGGATTAATTCATGCACAGAAGACACGAACACCCTCCGTAAAATGTAAAGAAAATGAGGGTTTTGCTCACACGTTTTG
Seq A exon
GACCACAGGTTCAACAAGCCACAGGCCATTAGGAACCAGTAGCATCTGTTTTAGTGACAATAAAGAGAGCTCCACATCCCTGTCAGATGACAAAGAAAAGAGACGAGAAGAGAATGAGGCTAAAGCTGAAGTTGGCACTGATGGCCAGAGGAACACAGAAATTAAAAAGGGCCCGGATATATCAAATACAGCTTTGACATCAGAACTAGAGACTGAAGTAGAGTTGAAACCTAAGGAAATCAAGAAACCTGAAAAAGAGAAAACTGGGAAGGAGAGTCTTCTGGAGCTGCTTGGGGCAATGAAGGTGGATGTCACTACTGTGCGTAAAGTGAGACCCCCAAGGTTTCCTCGAATCAGTGAAAAACCCAGCACAGACCAAATGGAAAGCACACAGAGCATGTTTCAGGATGCCATGGCTGAGGGTTCGAAACAGCG
Seq C2 exon
CGAGACCTTGAATCCAGCGCTGGTTGCTGCAGCTTCTGCAGCTGCGTCCACGTTGCCAAACAGCCAACAGGTGGAGTCAGAGCTCCTCCAGCAGCTGAGGAAACATGAAGCAGAACCGGACGCTCAGAGAGCCGACAGACAGAACATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057855_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.911 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0087314=ACR_tran=PU(68.2=91.1),PF0237710=Dishevelled=WD(100=32.2),PF154331=MRP-S31=PU(46.3=38.4)
C2:
PF0087314=ACR_tran=FE(25.6=100),PF154331=MRP-S31=FE(41.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTCAGCGCTGCACAG
R:
TCTGTCTGTCGGCTCTCTGAG
Band lengths:
326-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]